Digital Data in Biodiversity Research Conference, Berkeley
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Lodging and Logistics
Conference Abstracts
Conference Streaming and Recording
To the extent possible, the Conference sessions will be broadcast and recorded using Adobe Connect. Meeting hosts will monitor the chat to address questions/concerns. To connect, go to https://idigbio.adobeconnect.com/digitaldataberkeley, select “Enter as a Guest”, enter your first name and surname and click “Enter Room.” For more information, remote participants are strongly encouraged to visit the iDigBio Web Conferencing Wiki prior to connecting: https://www.idigbio.org/wiki/index.php/Web_Conferencing.
Agenda: Monday, 4 June 2018
Wireless link:
Twitter: #digibiodata
Day One | ||||
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Breakfast (On your own) 7:00-8:00 a.m. | ||||
Registration - ??? | ||||
Keynote Session {Location} 8:00 - 10:15 a.m. Moderator: Larry Page??? | ||||
Time | Title | Presenter(s) | ||
8:00-8:15 | Welcome and Introduction Introduction to iDigBio and ADBC |
??? Larry Page, Director of iDigBio and Curator of Fishes, Florida Museum of Natural History, University of Florida | ||
8:15-8:45 | James Hanken, Director, Museum of Comparative Zoology, Harvard University | |||
8:45-9:15 | David Blackburn, Florida Museum of Natural History, University of Florida | |||
9:15-9:45 | ||||
9:45-10:15 | Break - {Location} | |||
Concurrent Session I - {Location} (10:15 a.m. - Noon) Moderator: | ||||
10:15-10:35 | ||||
10:35-10:55 | ||||
10:55-11:15 | ||||
11:15-11:35 | ||||
11:35-11:55 | ||||
Concurrent Session II - {Location} (10:15 a.m. - Noon) Moderator: | ||||
10:15-10:35 | ||||
10:35-10:55 | ||||
10:55-11:15 | ||||
11:15-11:35 | ||||
11:35-11:55 | ||||
12:00-1:30 | Lunch (On your own) - See page ## of {Link to logistics document} for restaurant suggestions | |||
Concurrent Session III - {Location} (1:30 p.m. - ) Moderator: | ||||
1:30-1:50 | ||||
1:50-2:10 | ||||
2:10-2:30 | ||||
2:30-2:50 | ||||
2:50-3:10 | ||||
Concurrent Session IV - {Location} (1:30 p.m. - ) Moderator: | ||||
1:30-1:50 | ||||
1:50-2:10 | ||||
2:10-2:30 | ||||
2:30-2:50 | ||||
2:50-3:10 | ||||
3:10-3:40 | Break - {Location} | |||
Dinner (On your own) - 4:30 - 5:30 | ||||
Reception and Collections Tours at the Collections Research Facility, Varsity Drive (6:00-9:00 p.m.) Busses departing Hill Auditorium 5:30 p.m.; loading for return at 8:30 p.m., with one return bus also going to Hampton Inn Ann Arbor South |
Tuesday, 6 June 2017
Wireless link: http://its.umich.edu/enterprise/wifi-networks/wifi
Day Two | ||||
---|---|---|---|---|
Breakfast (On your own) 7:00 - 8:00 a.m. | ||||
Registration 7:00 - 8:00 a.m. | ||||
Plenary Session - The League Ballroom (8:00 - 10:15 a.m.) Session Recording Moderator: Katelin D. Pearson | ||||
Time | Title | Presenter(s) | ||
8:00-8:30 | Big Data, Museum Specimens, Access and Archiving - Lessons from #scanAllFish | Adam Summers, University of Washington | ||
8:30-9:00 | Video Data and Motion Analysis in Comparative Biomechanics Research | Beth Brainerd, Brown University | ||
9:00-9:30 | The PREDICTS Project: Projecting Responses of Ecological Diversity In Changing Terrestrial Systems |
Adriana De Palma, Natural History Museum, London | ||
9:30-10:00 | Field Collections to Digital Data: A Workflow for Fossils and the Use of Digital Data for Reconstructing Ancient Forests | Dori Contreras, University of California Museum of Paleontology | ||
10:00-10:15 | Natural History Data Pipelines: The Good, the Bad, and the Ugly | Andy Bentley, University of Kansas Biodiversity Institute | ||
10:15-10:45 | Break - The League Second Floor Concourse | |||
Concurrent Session III - The League Ballroom (10:45 a.m. - Noon) Session Recording Moderator: Katelin D. Pearson | ||||
10:45-11:00 | Using Statistical Analysis to Calculate the Size of Biodiversity Literature | Alicia Esquivel, Chicago Botanic Garden | ||
11:00-11:15 | Illustrating Value Added in Databasing Historical Collections: Entered, Proofed, and Done (or Not!) | Tony Reznicek, University of Michigan Herbarium | ||
11:15-11:30 | The Encyclopedia of Life v3: Constructing a Linked Data Model | Jennifer Hammock, Smithsonian National Museum of Natural History | ||
11:30-11:45 | Encyclopedia of Life Version 3: New Tools for the Exploration of Biodiversity Knowledge | Katja Schulz, Smithsonian National Museum of Natural History | ||
11:45-12:00 | How do People see Biodiversity? Using a Digital Identification Key in a Citizen Science Program | Mathilde Delaunay, Muséum national d'Histoire naturelle, Paris, France | ||
12:00-12:15 | Taxonomic Data Quality in GBIF: A Case Study of Aquatic Macroinvertebrate Groups | Joan Damerow, Field Museum of Natural History | ||
12:15-12:30 | Hole-y Plant Databases! Understanding and Preventing Biases in Botanical Big Data | Katelin D. Pearson, Florida State University | ||
Concurrent Session IV - The League Hussey Room (10:45 a.m. - Noon) Session Recording Moderator: Priscilla Tucker | ||||
10:45-11:00 | Reconstructing the Extinction Dynamics of Picea critchfieldii – The Application of Computer Vision to Fossil Pollen Analysis | Surangi Punyasena, University of Illinois | ||
11:00-11:15 | The Application of Optical Supperresolution Microscopy to the Study of Pollen Morphology | Michael Urban, University of Illinois - Urbana Champaign | ||
11:15-11:30 | Developing an Enterprise GIS to Support Collections Management, Teaching, and Research | Michael Kost, University of Michigan, Matthaei Botanical Gardens and Nichols Arboretum | ||
11:30-11:45 | How Digitizing and Tagging Helped Solve the Tully Monster Mystery | Paul Mayer, Field Museum of Natural History | ||
11:45-12:00 | Open Source Tools for Digitization Workflows | Mark Metz, USDA ARS SEL | ||
12:00-12:15 | iDigBio and the Digital Humanities | Maura Flannery, St. John's University, NY | ||
12:15-12:30 | Importance of Life Stage Capture in Dragonfly Specimen Digitization | Emily Sandall, Frost Entomological Museum, Penn State University | ||
12:30-1:45 | Lunch (On your own) - See page 3 of logistics document for restaurant suggestions | |||
Poster Session - The League Vandenberg Room (1:45 - 3:30 p.m.) | ||||
Widespread Sampling Bias in Herbarium Collections Identified from Comprehensively Sampled Mobilized Herbaria | Barnabas H. Daru Harvard University Herbaria | |||
Digital Curation of Botanical Specimens from Isle Royale National Park | Helen DeMarsh Johns Hopkins University | |||
Sharing Research Data: “I need to store and share data, and get recognition” | Danielle Descoteaux, Publisher, Ecology & Biodiversity Elsevier | |||
Visually Representing a Biodiversity Literature Collection Using Metadata and Full Text Analysis | Alicia Esquivel Chicago Botanic Garden | |||
Consider the Source: A Case Study Using GBIF Data for Research on Entocytherid Ostracods | Raquel A. Fagundo North Carolina Museum of Natural Sciences | |||
Research and Management Applications of Online Collection Data: A Case Study of Prairie Fen Biodiversity | Rachel Hackett Central Michigan University | |||
BioBeacon: An Online Field Guide to Digital Biodiversity Information Resources | Jarrett Blair, Bob Hanner, University of Guelph Biodiversity Institute of Ontario | |||
Identifying, Cross-referencing, and Extracting Dark Data using GeoDeepDive | Erika Ito University of Wisconsin-Madison | |||
Taxonomic Concept Mapping in Support of Floristic Studies | Thea Jaster Oregon State University | |||
The Potential Within a Modern Flora | Thea Jaster Oregon State University | |||
Imago: Building a Biocollections Repository for Digital Preservation and Scientific Reproducibility | Jennifer Laherty and Gary Motz Indiana University | |||
Exploring the Untapped Potential of CT Scanning in the Quantitative Analysis of Brachiopod Long Loops | Natalia Lopez Carranza University of California, Davis | |||
Kurator: A scientific workflow tool for data quality improvement of natural science collections data | James Macklin Agriculture and Agro-Food Canada | |||
Digitizing Archival Data: Ecoinformatics in the Alcohol House | Kaylin Martin Carnegie Museum of Natural History | |||
Biodiversity Literacy in Undergraduate Education (BLUE): Opportunities for Collaboration | Anna Monfils Central Michigan University | |||
Global Biotic Interactions: A Case Study in Ecological Data Aggregation | Jorrit Poelen Global Biotic Interactions | |||
Big Data Opportunities in Ecological and Biodiversity Informatics: A Functional Trait Perspective | Vaughn Shirey The Academy of Natural Sciences of Drexel University | |||
The Value of Digital Morphology for Understanding Plant (Paleo) Biodiversity | Selena Smith University of Michigan | |||
Automatic Generation of Herbarium Labels from Spreadsheet Data using LaTeX | R. Sean Thackurdeen New York Botanical Garden | |||
Wildbook: Computer-assisted Identification of Crowd-sourced Wildlife Imagery | Jon Van Oast Wild Me | |||
Patterns and Processes in the Evolution of Opisthoglyphous Fangs in Colubrid Snakes | Erin Westeen University of Michigan | |||
Digitization of Strepsirrhine Primates from the Duke Lemur Center | Gabriel Yapuncich North Carolina State University | |||
3:30-4:00 | Break - The League Second Floor Concourse | |||
Capstone Session Session Recording Moderator: Gil Nelson | ||||
4:00-4:30 | Prospects for the Use of Digitized Specimens in Studies of Plant Diversity and Evolution | Michael Donoghue, Patrick Sweeney, and Beth Spriggs, Yale University | ||
4:30-5:00 | A Vision for a National Cyberinfrastructure for Biodiversity Research and what NSF can do Enable it | Peter McCartney, National Science Foundation |