Fluid Preserved Invertebrate Imaging: Difference between revisions
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==[https://www.idigbio.org/wiki/index.php/Digitization_Training_Workshops Digitization Training Workshops Wiki Home]== | ==[https://www.idigbio.org/wiki/index.php/Digitization_Training_Workshops Digitization Training Workshops Wiki Home]== | ||
==[https://www.idigbio.org/content/fluid-preserved-invertebrate-imaging-workshop-opportunity Workshop Announcement]== | ==[https://www.idigbio.org/content/fluid-preserved-invertebrate-imaging-workshop-opportunity Workshop Announcement]== | ||
==[https://www.idigbio.org/content/entomologists-gather-ann-arbor-explore-fluid-preserved-arthropod-imaging Workshop Report]== | ==[https://www.idigbio.org/content/entomologists-gather-ann-arbor-explore-fluid-preserved-arthropod-imaging Workshop Report]== | ||
==[https://www.idigbio.org/wiki/index.php/Fluid_Preserved_Arthropds Arthropod and slide imaging interest group wiki]== | ==[https://www.idigbio.org/wiki/index.php/Fluid_Preserved_Arthropds Arthropod and slide imaging interest group wiki]== | ||
==Workshop Agenda and Logistics== | ==Workshop Agenda and Logistics== | ||
*[ | *[[Media:InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf|Tentative Workshop Outline]] | ||
*[ | *[[Media:Logistics_shuttle_meals.pdf|Shuttle info, hotel assignments, and meal plan]] | ||
*[ | *[[Media:Invert_Imaging_Workshop_Participants_Email.pdf|A few last-minute logistical details (text of e-mail, 2013-09-04)]] | ||
*[http://uunions.umich.edu/league/inn/ Information about Michigan League] | *[http://uunions.umich.edu/league/inn/ Information about Michigan League] | ||
*[http://www.belltowerhotel.com/?gclid=CMqM6O_tyrgCFREV7AodNzEAOg Bell Tower Hotel] | *[http://www.belltowerhotel.com/?gclid=CMqM6O_tyrgCFREV7AodNzEAOg Bell Tower Hotel] | ||
*[https://maps.google.com/maps?saddr=300+S.+Thayer+St.,+Ann+Arbor,+MI+48104&daddr=911+N+University+Ave,+Ann+Arbor,+MI&hl=en&sll=42.279103,-83.737997&sspn=0.004142,0.007322&geocode=FVAhhQIdXDsC-yk_NuTyQK48iDFSfGN9EDMrcQ%3BFT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg&t=h&dirflg=w&mra=ltm&z=19 Google Map link: Walking from Bell Tower to Michigan League] | *[https://maps.google.com/maps?saddr=300+S.+Thayer+St.,+Ann+Arbor,+MI+48104&daddr=911+N+University+Ave,+Ann+Arbor,+MI&hl=en&sll=42.279103,-83.737997&sspn=0.004142,0.007322&geocode=FVAhhQIdXDsC-yk_NuTyQK48iDFSfGN9EDMrcQ%3BFT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg&t=h&dirflg=w&mra=ltm&z=19 Google Map link: Walking from Bell Tower to Michigan League] | ||
*[ | *[[Media:Leaguemap.pdf|Downloadable pdf map from Bell Tower to Michigan League]] | ||
*[ | *[[Media:Central_large.pdf|U. Michigan Campus map]] | ||
*[https://maps.google.com/maps?saddr=911+N+University+Ave,+Ann+Arbor,+MI&daddr=1109+Geddes+Avenue+Ann+Arbor,+MI+48109-1079%3B+911+north+university+ann+arbor,+MI&hl=en&sll=42.278869,-83.736778&sspn=0.004799,0.008256&geocode=FT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg%3BFSgchQIdsE8C-yn1aGHrQ648iDH00aSWfUj7yQ&t=h&gl=us&dirflg=w&mra=ltm&z=19 Walking map: Michigan League to the U. Michigan Museum of Zoology] | *[https://maps.google.com/maps?saddr=911+N+University+Ave,+Ann+Arbor,+MI&daddr=1109+Geddes+Avenue+Ann+Arbor,+MI+48109-1079%3B+911+north+university+ann+arbor,+MI&hl=en&sll=42.278869,-83.736778&sspn=0.004799,0.008256&geocode=FT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg%3BFSgchQIdsE8C-yn1aGHrQ648iDH00aSWfUj7yQ&t=h&gl=us&dirflg=w&mra=ltm&z=19 Walking map: Michigan League to the U. Michigan Museum of Zoology] | ||
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==Presentations== | ==Presentations== | ||
*[ | *[[Media:IDigBio_Intro.pdf|Introduction to iDigBio, Gil Nelson] ] | ||
*[ | *[[Media:Brantley_InvertImaging_2013.pdf|Reflections on imaging invertebrate specimens in alcohol, Sandy Brantley]] | ||
*[ | *[[Media:DIY_Techniques.pdf|DIY Techniques, Mark O'Brien]] | ||
*[ | *[[Media:Patrick_spider_imaging.pdf|Imaging spiders for the South Dakota Spider Survey: challenges and frsutrations, Brian Patrick]] | ||
*[ | *[[Media:Scanning_Microscope_Slides_Oboyski.pdf|Scanning Microscope Slides, Peter Oboyski]] | ||
*[ | *[[Media:Naturalis_microscopic_slides.pdf|Slide imaging at Naturalis Biodiversity Center, Joost van Leusen]] | ||
*[ | *[[Media:Hand_sanitizer_Droege.pdf|Macro photography in hand sanitizer, Sam Droege]] | ||
*[ | *[[Media:Final_Stephanie_Ware_02.pdf|Slide imaging at the Field Museum, Stphanie Ware]] | ||
*[ | *[[Media:IDIGBIO_WORKING.pdf|Wet Specimen Imaging at CAS: Going with the flow into the 21st Century, Vic Smith]] | ||
*[ | *[[Media:Brilmyer_idig_bio.pdf|Conceptualizing and implementing large-scale collection digitization, Gracen Brilmyer]] | ||
*[ | *[[Media:Hedin_iDigBio_presentation.pdf|Imaging alcohol-preserved Arachnids using a Visionary Digital System, Marshal Hedin]] | ||
*[ | *[[Media:Selden.pdf|Imaging techniques in the study of fossil spiders, Paul Selden]] | ||
*[ | *[[Media:Lightroom_presentation.pdf|Processing images with Lightroom, Rich Rabeler]] | ||
*[ | *[[Media:Imaging_Vic_Smith.pdf|Fluid-preserved imaging, Roy Larimer]] | ||
*[ | *[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]] | ||
== Workshop Recordings == | == Workshop Recordings == | ||
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==Images for Review== | ==Images for Review== | ||
*[ | *[[Media:08-10-29_Erig_blaesa2_comp.jpg|Spider from Sandy Brantley 1]] | ||
*[ | *[[Media:Xy_cu_07-12-20_114944_R8_S4.jpg|Spider from Sandy Brantley 2]] | ||
==Documentation== | ==Documentation== | ||
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*[http://www.youtube.com/watch?v=Bdmx_8zqvN4 Insect Photo Enhancement: Photoshop Tutorial (Sam Droege)] | *[http://www.youtube.com/watch?v=Bdmx_8zqvN4 Insect Photo Enhancement: Photoshop Tutorial (Sam Droege)] | ||
*[http://www.youtube.com/watch?v=izqFaia_8bU How to Preserve Insect Specimens in Hand Sanitizer....the Video (Sam Droege)] | *[http://www.youtube.com/watch?v=izqFaia_8bU How to Preserve Insect Specimens in Hand Sanitizer....the Video (Sam Droege)] | ||
*[ | *[[Media:How_to_Take_MacroPhotographs_of_Insects_BIML_Lab2.pdf Detailed Macrophotography of Insect Specimens: A Laboratory Setup (Alexander & Droege)] | ||
*[https://www.idigbio.org/sites/default/files/Image%20File%20Format%20Recommendations%20and%20Standards.pdf iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images] | *[https://www.idigbio.org/sites/default/files/Image%20File%20Format%20Recommendations%20and%20Standards.pdf iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images] | ||
*[ | *[[Media:Leica_Imaging_Manual_July1_2013.pdf|LEICA APPLICATION SUITE V 4.2 IMAGING MANUAL The Field Museum of Natural History — Moreau Lab (www.moreaulab.org) for high-resolution specimen image stacking, Gracen Brilmyer]] | ||
*[ | *[[Media:Ant_Databasing_Protocols_August.pdf|Ant Databasing Project Protocols, Field Museum, Gracen Brilmyer ]] | ||
*[ | *[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]] | ||
==Workflow Documents== | ==Workflow Documents== | ||
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*[http://www.news.com.au/technology/gallery-e6frflwi-1226719020089?page=2 A few of Sam Droege's insect images] | *[http://www.news.com.au/technology/gallery-e6frflwi-1226719020089?page=2 A few of Sam Droege's insect images] | ||
*[http://www.flickr.com/photos/usgsbiml/ Sam Droege's Flickr page] | *[http://www.flickr.com/photos/usgsbiml/ Sam Droege's Flickr page] | ||
*[ | *[Dried Insect Digitization Workshop|Pinned insect digitization workshop, Chicago, Spring 2013]] | ||
*[ | *[Wet Collections Digitization Workshop|Wet collections digitization wiki, U. Kansas, March 2013]] | ||
*[http://www.microscopyu.com/tutorials/java/digitalimaging/pixelcalculator/ Nikon's Digital Camera Resolution Requirements for Optical Microscopy] | *[http://www.microscopyu.com/tutorials/java/digitalimaging/pixelcalculator/ Nikon's Digital Camera Resolution Requirements for Optical Microscopy] | ||
*[http://www.hamamatsu.com/jp/en/product/new/C12000/index.html NanoZoomer from Hamamatsu] | *[http://www.hamamatsu.com/jp/en/product/new/C12000/index.html NanoZoomer from Hamamatsu] | ||
Revision as of 11:43, 6 January 2014
Fluid-preserved Invertebrate and Microscopic Slide Imaging Workshop Wiki
This wiki contains materials supporting iDigBio's Fluid-preserved Invertebrate and Microscopic Slide Imaging to be held at the University of Michigan, September 16-18, 2013. Included are links to resources, outlines, and training materials related to workshop content. Use the link immediately below to return to the main Digitization Resources wiki.
Digitization Training Workshops Wiki Home
Workshop Announcement
Workshop Report
Arthropod and slide imaging interest group wiki
Workshop Agenda and Logistics
- Tentative Workshop Outline
- Shuttle info, hotel assignments, and meal plan
- A few last-minute logistical details (text of e-mail, 2013-09-04)
- Information about Michigan League
- Bell Tower Hotel
- Google Map link: Walking from Bell Tower to Michigan League
- Downloadable pdf map from Bell Tower to Michigan League
- U. Michigan Campus map
- Walking map: Michigan League to the U. Michigan Museum of Zoology
Nearby (and not-so-nearby) Restaurants
- Restaurants at Michigan League
- Restaurants near Michigan League
- Map of restaurants in Ann Arbor (Michigan League is at flag J for reference)
Collaborative Notes Documents
Presentations
- [[Media:IDigBio_Intro.pdf|Introduction to iDigBio, Gil Nelson] ]
- Reflections on imaging invertebrate specimens in alcohol, Sandy Brantley
- DIY Techniques, Mark O'Brien
- Imaging spiders for the South Dakota Spider Survey: challenges and frsutrations, Brian Patrick
- Scanning Microscope Slides, Peter Oboyski
- Slide imaging at Naturalis Biodiversity Center, Joost van Leusen
- Macro photography in hand sanitizer, Sam Droege
- Slide imaging at the Field Museum, Stphanie Ware
- Wet Specimen Imaging at CAS: Going with the flow into the 21st Century, Vic Smith
- Conceptualizing and implementing large-scale collection digitization, Gracen Brilmyer
- Imaging alcohol-preserved Arachnids using a Visionary Digital System, Marshal Hedin
- Imaging techniques in the study of fossil spiders, Paul Selden
- Processing images with Lightroom, Rich Rabeler
- Fluid-preserved imaging, Roy Larimer
- Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders
Workshop Recordings
Images for Review
Documentation
- Essig Museum of Entomology microscopic slide image database. Search for "Aetheca" in the filename (as an example) and click on the filename link to see the image. Contributed by Pete Oboyski.]
- Crowd Sourcing project for glass slides at Naturalis Biodiversity Center (Google Chrome translates the site nicely)
- How to Take High Resolution Macro photographs Using a Simple Studio Setup: Camera Equipment (Sam Droege)
- Insect Photo Enhancement: Photoshop Tutorial (Sam Droege)
- How to Preserve Insect Specimens in Hand Sanitizer....the Video (Sam Droege)
- [[Media:How_to_Take_MacroPhotographs_of_Insects_BIML_Lab2.pdf Detailed Macrophotography of Insect Specimens: A Laboratory Setup (Alexander & Droege)]
- iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images
- LEICA APPLICATION SUITE V 4.2 IMAGING MANUAL The Field Museum of Natural History — Moreau Lab (www.moreaulab.org) for high-resolution specimen image stacking, Gracen Brilmyer
- Ant Databasing Project Protocols, Field Museum, Gracen Brilmyer
- Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders
Workflow Documents
Interesting Sidelights
- Recent news article from Australia highlighting Sam Droege and his images
- A few of Sam Droege's insect images
- Sam Droege's Flickr page
- [Dried Insect Digitization Workshop|Pinned insect digitization workshop, Chicago, Spring 2013]]
- [Wet Collections Digitization Workshop|Wet collections digitization wiki, U. Kansas, March 2013]]
- Nikon's Digital Camera Resolution Requirements for Optical Microscopy
- NanoZoomer from Hamamatsu
- IrfanView software for file re-naming
- Potential source for bar codes suggested by Mariel Campbell
- Potential source for labels suggested by Joost Leusen