Glossary of Projects and Organizations

Glossary of Projects and Organizations

Short Name	ABLS
Long Name	American Bryological & Lichenological Society
URL	http://www.abls.org/
Definition	Professional association of brytologists and lichenologists. The society was founded in 1898, is devoted to the scientific study of all aspects of the biology of bryophytes and lichen-forming fungi, and is one of the nation's oldest botanical organizations. Membership is open to all persons (professionals and amateurs) with interest in these organisms.

Short Name	ACIS
Long Name	Advanced Computing and Information Systems Laboratory
URL	http://acis.ufl.edu/
Definition	Associated with the Department of Electrical and Computer Engineering at the University of Florida (UF). Since 2001, the ACIS Lab has pioneered research and development in machine and application virtualization in distributed computing and web-based science gateways, high-performance wide-area overlay virtual networks, social and peer-to-peer virtual private networks, and self-configuring virtual appliances. The ACIS Lab hosts one of the main funded sites of the NSF FutureGrid project. The ACIS Lab has excellent connectivity to national and international networks through either 1-Gigabit or 10-Gigabit fiber connections.

Short Name	ADBC
Long Name	Advancing Digitization of Biodiversity Collections
URL	http://www.nsf.gov/publications/pub_summ.jsp?ods_key=nsf11005
Definition	This program encourages new collaborations to develop thematic networks and an innovative national resource coordinating organization, the purpose of which is to create a national resource of digital data documenting existing biological collections and advancing scientific knowledge by improving access to digitized information (including images) residing in vouchered scientific collections across the United States.

Short Name	ALA
Long Name	Atlas of Living Australia
URL	http://www.ala.org.au/
Definition	The Atlas of Living Australia is a joint initiative to build a national database of Australia's flora and fauna. The project brings together a huge array of information on Australia's biodiversity, accessible through a single website. Partners in this collaborative project include CSIRO, museums, herbaria, other biological collections, the Australian Government, and the community.

Short Name	AmphibiaWeb
Long Name	AmphibiaWeb
URL	http://amphibiaweb.org/
Definition	An online system that provides access to information on amphibian declines, conservation, natural history, and taxonomy. Includes georeferenced distribution maps utilizing Berkeley Mapper.

Short Name	Animal Divesity Web
Long Name	Animal Divesity Web
URL	http://animaldiversity.ummz.umich.edu/site/index.html
Definition	Animal Diversity Web (ADW) is an online database of animal natural history, distribution, classification, and conservation biology at the University of Michigan. Data include descriptions, still images, video, and audio.

Short Name	Arctos
Long Name	Arctos
URL	http://arctos.database.museum/home.cfm
Definition	Arctos is an ongoing effort to integrate access to specimen data, collection-management tools, and external resources on the internet. Nearly all that is known about a specimen can be included in Arctos, and, except for some data encumbered for proprietary reasons, data are open to the public. Arctos is a multidisciplinary collection management information system for natural history. It integrates access to diverse types of collections (paleontology, entomology, botany, ornithology, mammalogy, herpetology) and data types, including specimen records, observations, tissues, parasites, stomach contents, fieldnotes and other documents, and media such as images and audio recordings. It also integrates data with projects and publications that either contribute to the collections or that use data from the collections.

Short Name	BHL
Long Name	Biodiversity Heritage Library
URL	http://www.biodiversitylibrary.org/
Definition	The Biodiversity Heritage Library (BHL) is a consortium of natural history and botanical libraries that cooperate to digitize and make accessible the legacy literature of biodiversity held in their collections and to make that literature available for open access and responsible use as a part of a global biodiversity commons. BHL also serves as the foundational literature component of the Encyclopedia of Life (EOL). BHL content may be freely viewed through the online reader or downloaded in part or as a complete work in PDF, OCR text, or JPG2000 file formats.

Short Name	BiSciCol
Long Name	Biological Science Collections Tracker
URL	http://biscicol.blogspot.com/p/home.html
Definition	BiSciCol (Biological Science Collections) Tracker is an NSF-funded collaborative project with the goal of building an infrastructure designed to tag and track scientific collections and all of their derivatives. BiSciCol is designed on the simple premise that changes to data objects are trackable with GUIDs, and that semantic relationships are assignable and discoverable among physical and data objects.

Short Name	CF21
Long Name	Cyberinfrastructure Framework for 21st Century Science and Engineering
URL	http://www.nsf.gov/pubs/2010/nsf10015/nsf10015.jsp
Definition	A report from the National Science Foundation outlining cyberinfrastructure crises, needs, issues, and strategies for the 21st century.

Short Name	CNABH
Long Name	Consortium of North American Bryophyte Herbaria
URL	http://symbiota.org/bryophytes/index.php
Definition	Created to serve as a gateway to distributed data resources of interest to the taxonomic and environmental research community in North America. Through a common web interface, we offer tools to locate, access and work with a variety of data, starting with searching databased herbarium records. A suite of data access technologies and a distributed network of universities, museums, and agencies that provide taxonomic and environmental information.

Short Name	CNALH
Long Name	Consortium of North American Lichen Herbaria
URL	http://symbiota.org/nalichens/
Definition	Created to serve as a gateway to distributed data resources of interest to the taxonomic and environmental research community in North America. Through a common web interface, we offer tools to locate, access and work with a variety of data, such as keying to species. A suite of data access technologies and a distributed network of universities, botanical gardens, museums, and agencies that provide taxonomic and environmental information. Initially created to integrate databases between Arizona State University and the Santa Barbara Botantical Garden, the consortium is growing to extend its network to other partners within North America.

Short Name	CollectionsWeb
Long Name	CollectionsWeb
URL	http://collectionsweb.org/index.html
Definition	CollectionsWeb is an outreach of The Research Coordination Network (RCN) for Building a National Community of Natural History Collections, which started as a way to build communication among people at natural history collections, researchers using those collections, other programs dealing with issues important to collections, and other stakeholders. The goal of this project is to build community among natural history collections and for CollectionsWeb to serve as an online hub for collections-based activities. It provides links to sites with specimen data, but does not deliver data, itself.

Short Name	CRIA
Long Name	Centro de Referência em Informação Ambiental
URL	http://www.cria.org.br/
Definition	The Reference Center on Environmental Information, is an educational, nonprofit organization, which aims to disseminate scientific and technological knowledge and promote education, to promote the conservation and sustainable use of natural resources and the formation of citizenship. See their project 'species Link'.

Short Name	DataONE
Long Name	Data Observation Network for Earth
URL	https://www.dataone.org/
Definition	Data Observation Network for Earth (DataONE) desires to be the foundation of new innovative environmental science through a distributed framework and sustainable cyberinfrastructure that meets the needs of science and society for open, persistent, robust, and secure access to well-described and easily discovered Earth observational data. Supported by the U.S. National Science Foundation, DataONE will ensure the preservation and access to multi-scale, multi-discipline, and multi-national science data. DataONE will transcend domain boundaries and make biological data available from the genome to the ecosystem; make environmental data available from atmospheric, ecological, hydrological, and oceanographic sources; provide secure and long-term preservation and access; and engage scientists, land-managers, policy makers, students, educators, and the public through logical access and intuitive visualizations. Most importantly, DataONE is not an end but a means to serve a broader range of science domains both directly and through the interoperability with the DataONE distributed network.

Short Name	Discover Life
Long Name	Discover Life
URL	http://www.discoverlife.org/
Definition	Provides free on-line tools to identify species, share ways to teach and study nature's wonders, report findings, build maps, process images, and contribute to and learn from a growing, interactive encyclopedia of life that now has more than one million species pages.

Short Name	EOL
Long Name	Encyclopedia of Life
URL	http://eol.org/
Definition	EOL's vision is to offer global access to knowledge about life on Earth. Its mission is to increase awareness and understanding of living nature through an Encyclopedia of Life that gathers, generates, and shares knowledge in an open, freely accessible and trusted digital resource.

Short Name	FishNet 2
Long Name	FishNet
URL	http://www.fishnet2.net/
Definition	FishNet is a collaborative effort by natural history museums and other biodiversity institutions to establish a global network of Ichthyology collections. There is an open invitation for any institution with a fish collection to join. The current portal is an outgrowth of the original FishNet project with improvements in network stability, georeferencing capabilities, and technical support. Users are provided access to searchable, mappable, and downloadable data that are cached on a regular basis from participating institutions who have published their data via the DiGIR or TAPIR protocols with a Darwin Core schema.

Short Name	GBIF
Long Name	Global Biodiversity Information Facility
URL	http://www.gbif.org/
Definition	The Global Biodiversity Information Facility (GBIF) was established by governments in 2001 to encourage free and open access to biodiversity data, via the Internet. Through a global network of 57 countries and 47 organizations, GBIF promotes and facilitates the mobilization, access, discovery, and use of information about the occurrence of organisms over time and across the planet. GBIF is not a data repository. Its purpose is to serve data from other repositories.

Short Name	Gene Ontology
Long Name	The Gene Ontology
URL	http://www.geneontology.org/
Definition	The Gene Ontology project is a major bioinformatics initiative with the aim of standardizing the representation of gene and gene product attributes across species and databases. The project provides a controlled vocabulary of terms for describing gene product characteristics and gene product annotation data from GO Consortium members, as well as tools to access and process this data.

Short Name	GLOBIS
Long Name	Global Butterfly Information System
URL	http://www.lepidat.org/platform/lex/globis/home/index.do
Definition	The Global Butterfly Information System provides information on butterflies based on several research projects. It supports data, pictures, and label information on nearly all type specimen of European museum collections. Summary factsheets are also available on a growing number of species.

Short Name	Herbaria@Home
Long Name	Herbaria@Home
URL	http://herbariaunited.org/atHome/
Definition	A crowd sourcing method for documenting the United Kingdom's herbarium collections using remote volunteers.

Short Name	HerpNET
Long Name	HerpNET
URL	http://www.herpnet.org/
Definition	HerpNET is a collaborative effort by natural history museums to establish a global network of herpetological collections data, funded by the National Science Foundation (NSF No. 0132303) and a GBIF DIGIT grant. Sixty-four institutions are participating in the HerpNET community, with an open-ended invitation to institutions who would like to join. Currently 50 institutions are available on the specimen searching portal, with data from over 5.5 million specimens available for searching.

Short Name	HUB
Long Name	Home Uniting Biocollections
URL	http://www.nsf.gov/pubs/2010/nsf10603/nsf10603.htm
Definition	A co-funded partnership between the University of Florida and Florida State University that will deliver the Integrated Digitized Biocollections (iDigBio). The central aggregator of digitized biological collection data from TCNs, PENs, and other collection locations. Charged by NSF with being the national resource for biological collection digitization.

Short Name	Hymenoptera Online
Long Name	Hymenoptera Online
URL	http://hol.osu.edu/
Definition	Extensive information of Hymenoptera including specimen-based distribution, literature references, along with digitalized publications, and specimen images.

Short Name	iDigBio
Long Name	Integrated Digitized Biocollections
URL	https://www.idigbio.org/
Definition	The project funded by the NSF to develop an integrated national infrastructure for digitization of existing biodiversity collections in the U.S. iDigBio is also known as the National Resource for Advancing Digitization of Biological Collections (ADBC).

Short Name	InvertNet
Long Name	InvertNet
URL	http://invertnet.org/about
Definition	InvertNet is one of three initial Thematic Colletions Networks funded by the National Science Foundation's Advancing Digitization of Biological Collections (ADBC) program to provide unprecedented access to specimen images and data from invertebrate collections. This website is designed as a platform for research and education on the biodiversity of invertebrate animals, initially focusing on terrestrial and freshwater aquatic arthropods (insects and related groups).

Short Name	iPlant
Long Name	iPlant Collaborative
URL	http://www.iplantcollaborative.org/
Definition	iPlant is a community of researchers, educators, and students working to enrich all plant sciences through the development of cyberinfrastructure - the physical computing resources, collaborative environment, virtual machine resources, and interoperable analysis software and data services that are essential components of modern biology.

Short Name	IWGSC
Long Name	Interagency Working Group on Scientific Collections
URL	http://www.whitehouse.gov/sites/default/files/sci-collections-report-2009-rev2.pdf
Definition	An interagency group studying and characterizing federally held scientific collections and determining their long-term stewardship needs.

Short Name	Macaulay Library
Long Name	Macaulay Library
URL	http://www.macaulaylibrary.org
Definition	A multimedia resource for the study of animal behavior and biodiversity, with more than 175,000 audio and 60,000 video recordings documenting the behavioral diversity of birds and other animals. The organization also provides training, expert consultation, and equipment that enable scientists, educators, and nature enthusiasts to discover and record the natural world.

Short Name	Map of Life
Long Name	Map of Life
URL	http://www.mapoflife.org/
Definition	This website aims to be a complete resource for convergent evolution. It allows exploration of the ways that similar adaptive solutions have repeatedly evolved from unrelated starting points and identifies hundreds of examples of convergence.

Short Name	MIBBI
Long Name	Minimum Information for Biological and Biomedical Investigations
URL	http://mibbi.sourceforge.net
Definition	This website is a portal to minimum information guidelines from diverse bioscience communities

Short Name	Morphster
Long Name	Morphster
URL	http://www.morphster.org/
Definition	Morphster.org's goal is to develop a demonstration prototype of a service-oriented architecture enabling and supporting morphologically based phylogenetic studies.

Short Name	NEOMAP
Long Name	Neogene Mammal Mapping Portal
URL	http://www.ucmp.berkeley.edu/neomap/use.html
Definition	NEOMAP is an initial stage in a distributed database system for paleomammalogy, designed to link different, free-standing databases (Miocene Mammal Mapping Project [MIOMAP] and FAUNMAP) by a common access portal. These two linked datasets now provide point-occurrence data for all published late-Oligocene through Holocene mammals in the USA, and for many Quaternary localities in Canada. Interactively search for, retrieve, and analyze data from the MIOMAP and FAUNMAP databases, either separately or in concert.

Short Name	NESCent
Long Name	National Evolutionary Synthesis Center
URL	http://www.nescent.org/
Definition	The National Evolutionary Synthesis Center (NESCent) is a nonprofit science center dedicated to cross-disciplinary research in evolution. NESCent is jointly operated by Duke University, The University of North Carolina at Chapel Hill, and North Carolina State University, and is sponsored by the National Science Foundation. NESCent promotes the synthesis of information, concepts and knowledge to address significant, emerging, or novel questions in evolutionary science and its applications. NESCent achieves this by supporting research and education across disciplinary, institutional, geographic, and demographic boundaries.

Short Name	NIBA
Long Name	Network Integrated Biocollections Alliance
URL	http://digbiocol.wordpress.com/
Definition	An alliance that developed the strategic plan from which the National Science Foundation's Advancing Digitization of Biological Collections (ADBC) was launched.

Short Name	NSCA
Long Name	Natural Science Collections Alliance
URL	http://www.nscalliance.org
Definition	The Natural Science Collections Alliance is a Washington, D.C.-based nonprofit association that supports natural science collections, their human resources, the institutions that house them, and their research activities for the benefit of science and society. Members are part of an international community of museums, botanical gardens, herbariums, universities and other institutions that house natural science collections and utilize them in research, exhibitions, academic and informal science education, and outreach activities.

Short Name	OpenStack
Long Name	Open Stack Cloud Manager
URL	http://www.openstack.org/
Definition	OpenStack is an IaaS cloud computing project by Rackspace Cloud and NASA. Currently more than 120 companies have joined the project among which are Citrix Systems, Dell, AMD, Intel, Canonical, SUSE Linux, HP, and Cisco. It is free open source software released under the terms of the Apache License. OpenStack integrates code from NASA's Nebula platform as well as Rackspace's Cloud Files platform.

Short Name	Phenoscape
Long Name	Phenoscape
URL	http://phenoscape.org/wiki/Main_Page
Definition	The overall objective for Phenoscape is to create a scalable infrastructure that enables linking descriptive phenotype observations across different fields of biology by the semantic similarity of their free-text descriptions. In other words, we are trying to make descriptive observations amenable to large-scale computation so that they can be subjected to computational data integration and knowledge discovery techniques in ways similarly powerful as the traditional techniques used for numeric, quantitative observations.

Short Name	Pro iBiosphere
Long Name	Pro iBiosphere
URL	http://www.pro-ibiosphere.eu
Definition	Coordination and policy development in preparation for a European Open Biodiversity Knowledge Management System, addressing Acquisition, Curation, Synthesis, Interoperability and Dissemination - Biodiversity information constitutes an important source of knowledge for many disciplines. For example, it is fundamental to supporting conservation and for understanding the potential impacts of climate change. External and internal factors call for an urgent modernization of the production and accessibility of these data, information and knowledge. These external factors include the need for biodiversity data to support decisions for regional and taxon focused conservation. Internal factors are a consequence of the opportunities of the digital revolution, and the need to reconcile the escalating volume of data with the requirement to curate it by a fixed number of taxonomists. The pro-iBiosphere project has been launched for a period of two years (September 1st, 2012 to August 31st, 2014), with the goal of addressing technical and semantic interoperability challenges and preparing the ground for the creation of a system for intelligent management of biodiversity knowledge which will improve the present system of taxonomic literature.

Short Name	Species 2000
Long Name	Species 2000
URL	http://www.sp2000.org/index.php?option=com_content&task=view&id=13&Itemid=41
Definition	Species 2000 is a "federation" of database organisations working closely with users, taxonomists, and sponsoring agencies. Its goal is to create a validated checklist of all the world's species (plants, animals, fungi and microbes) by bringing together an array of global species databases covering each of the major groups of organisms. The programme in partnership with the Integrated Taxonomic Information system (ITIS) of North America currently produces the Catalogue of Life, which is used by the Global Biodiversity Information Facility (GBIF), and Encyclopedia of Life (EoL) as the taxonomic backbone to their web portals.

Short Name	speciesLink
Long Name	speciesLink
URL	http://splink.cria.org.br
Definition	species Link is a distributed system that integrates information in real-time primary data from scientific collections. The system was developed thanks to the support of institutions: FAPESP, GBIF, JRS Foundation, MCT, CNPq, FINEP and CRIA . The goal of the network is to link species integrate specie and specimen data available in natural history museums, herbaria and culture collections, making it openly and freely available on the Internet. Tools are being developed to help interoperability, integration, visualization, and data cleaning.

Short Name	SPNHC
Long Name	The Society for the Preservation of Natural History Collections
URL	http://www.spnhc.org/
Definition	The Society for the Preservation of Natural History Collections [SPNHC] is an international society whose mission is to improve the preservation, conservation and management of natural history collections to ensure their continuing value to society. SPNHC takes a leading role in promoting collections care issues to the academic community, governments, and the general public. Our members are dedicated to training and mentoring the next generation of collections professionals.

Short Name	STEM
Long Name	The Science, Technology, Engineering, and Mathematics Coalition
URL	http://www.stemedcoalition.org/
Definition	The Science, Technology, Engineering, and Mathematics (STEM) Education Coalition works to support STEM programs for teachers and students at the U. S. Department of Education, the National Science Foundation, and other agencies that offer STEM related programs. The STEM Education Coalition represents all sectors of the technological workforce, from knowledge workers, to educators, to scientists, engineers, and technicians. The participating organizations of the STEM Education Coalition are dedicated to ensuring quality STEM education at all levels.

Short Name	Symbiota
Long Name	Symbiota Software Project
URL	http://symbiota.org/tiki/tiki-index.php
Definition	The Symbiota Software Project is working towards building a library of web tools to aid biologists in establishing specimen-based virtual floras and faunas. Symbiota web tools strive to integrate biological community knowledge and data in order to synthesize a network of databases and tools that will aid in increasing our overall environmental comprehension. The central premise of this open source software project is that through a partnership between software engines and scientific community, higher quality and more publicly useful biodiversity portals can be built.

Short Name	TCN
Long Name	Thematic Collections Network
URL	http://www.nsf.gov/pubs/2010/nsf10603/nsf10603.htm
Definition	Networks of collaborative institutions funded by NSF as part of Advancing Digitization of Biological Collections (ADBC). TCNs are responsible for conducting the digitization of collections. TCNs are charged with defining and delineating subprojects for technology development or content generation; identifying deliverable goals, metrics for assessment, and specific needs for community support; providing technical support; and strengthening communications and outreach to other collections.

Short Name	The Field Book Project
Long Name	The Field Book Project
URL	http://www.mnh.si.edu/rc/fieldbooks/
Definition	The Field Book Project's overall mission is to create one online location for scholars and others to visit when searching for field books and other field research materials. Funded by the Council for Library and Information Resources (CLIR), the Project is a joint initiative between the Smithsonian National Museum of Natural History and the Smithsonian Institution Archives.

Short Name	Universal Chalcidiodea Database
Long Name	Universal Chalcidiodea Database
URL	http://www.nhm.ac.uk/research-curation/research/projects/chalcidoids/database/
Definition	Allows users to find the current valid taxon for genus- and species-group names; browse valid families, genera, and species, with synonyms; list chalcidoid parasitoids of an associate family, genus, or species; list taxa associated with a valid chalcidoid genus or species; list chalcidoid taxa recorded from regions, countries, or states; and browse images and videos of chalcidoids.

Short Name	UFBI
Long Name	University of Florida Biodiversity Institute
URL	http://news.ufl.edu/2002/11/07/biodiversity/
Definition	Established at the Florida Museum of Natural History (FLMNH) and located on the University of Florida (UF) campus, the mission of the Biodiversity Institute is to expand the research and outreach capacity of the FLMNH. The Institute creates a cross-disciplinary research facility where scientists, educators, students, and policy-makers develop research and educational collaborations. It will meet the challenge of understanding biodiversity in a rapidly changing world by accelerating research and distribution of validated information, thereby improving the ability to respond to environmental issues and challenges. The Institute is expected to create additional synergy and efficiencies through the hiring of key positions and the implementation of policies that create collaboration and holistic problem solving.

Short Name	USVH
Long Name	United States Virtual Herbarium (USVH) project
URL	http://usvirtualherbarium.org/
Definition	The mission of the United States Virtual Herbarium (USVH) is to provide, using digital technologies, integrated access to all the plant specimen information in the museums and herbaria of the United States of America and, by so doing, better inform scientific research in areas of national and global significance, promote adoption of internationally recognized biological data management standards, and encourage interest in plant diversity.

Short Name	VertNet
Long Name	VertNet
URL	http://vertnet.org/index.php
Definition	A collaboration of 171 collections from 12 countries, with 52 additional collections from 20 countries, committed to participation in a cloud-based computing strategy to create a fast, cost-effective, and scalable data platform to deliver veterbrate collections data via the web. Serves as an umbrella for MaNIS, HerpNet, ORNIS, and FishNEt.