Digitizing Fluid-preserved Vertebrate Specimens: Difference between revisions
Jump to navigation
Jump to search
Agenda, Day 1
Agenda, Day 2
| (35 intermediate revisions by 2 users not shown) | |||
| Line 15: | Line 15: | ||
*[https://docs.google.com/document/d/1nkLlcIofDtWdz58mW096uOt6yo4x30FR123eCE0nR7U/edit?usp=sharing Additional agenda items document] | *[https://docs.google.com/document/d/1nkLlcIofDtWdz58mW096uOt6yo4x30FR123eCE0nR7U/edit?usp=sharing Additional agenda items document] | ||
*[https://docs.google.com/document/d/16KZvAfY8ywCn2BE6C4RyGzXhFu7XM00_4BBzaGAg7Wg/edit?usp=sharing Status of imaging]] | *[https://docs.google.com/document/d/16KZvAfY8ywCn2BE6C4RyGzXhFu7XM00_4BBzaGAg7Wg/edit?usp=sharing Status of imaging]] | ||
*[https://docs.google.com/document/d/1hUKrI8ueCXj_6LxwAutjEPIq59WxJ2XsF3bCwooABD4/edit Imaging Technologies Notes] | |||
==Agenda, Day 1<br>Tuesday, March 15, 2016== | ==Agenda, Day 1<br>Tuesday, March 15, 2016== | ||
| Line 36: | Line 37: | ||
|style="vertical-align:top; text-align: left;"|8:15-8:45 a.m. | |style="vertical-align:top; text-align: left;"|8:15-8:45 a.m. | ||
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"| | |rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"| | ||
Introduction to ADBC, iDigBio, and TCN Development | [[Media:Page.Cong.Brief.INHS_2016.pdf|Introduction to ADBC, iDigBio, and TCN Development]] | ||
|Larry Page, iDigBio/Florida Museum of Natural History | |Larry Page, iDigBio/Florida Museum of Natural History | ||
|- | |- | ||
|- | |- | ||
|style="vertical-align:top;"|8:45-9:15 a.m. | |style="vertical-align:top;"|8:45-9:15 a.m. | ||
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Why this Workshop?<br>Workshop Goals, Discussion, agenda additions | |rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|[[Media:Why_this_workshop.pdf|Why this Workshop?]]<br>Workshop Goals, Discussion, agenda additions | ||
|Larry Page <br> Gil Nelson | |Larry Page <br> Gil Nelson | ||
|- | |- | ||
| Line 51: | Line 52: | ||
|- | |- | ||
|style="vertical-align:top;"|9:45-10:15 a.m. | |style="vertical-align:top;"|9:45-10:15 a.m. | ||
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for imaging herps | |rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:Kaiser_Illinois.pdf|The case for imaging herps]] | ||
|Hinrich Kaiser, Victor Valley College | |Hinrich Kaiser, Victor Valley College | ||
|- | |- | ||
| Line 60: | Line 61: | ||
|- | |- | ||
|style="vertical-align:top;"|10:45-11:15 a.m. | |style="vertical-align:top;"|10:45-11:15 a.m. | ||
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for 2D imaging | |rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:Mark_SabajPerez.pdf|The case for 2D imaging]] | ||
|Mark Sabaj-Perez | |Mark Sabaj-Perez | ||
|- | |- | ||
|- | |- | ||
|style="vertical-align:top;"|11:15-12:00 p.m. | |style="vertical-align:top;"|11:15-12:00 p.m. | ||
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for 3D imaging | |rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:Bart_Case_for_3D_Imagineg_Vertebrate_Speciments.pdf|The case for 3D imaging]]<br>[[Media:Rios_photogrammetry_march2016.pdf|Photogrammetry]] | ||
|Hank Bart, Tulane<br>Nelson Rios, Tulane | |Hank Bart, Tulane<br>Nelson Rios, Tulane | ||
|- | |- | ||
|- | |- | ||
|style="vertical-align:top;"|12:00-12:30 p.m. | |style="vertical-align:top;"|12:00-12:30 p.m. | ||
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for CT imaging | |rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:CaseForCT_Blackburn_14March2016.pdf|The case for CT imaging]] | ||
|David Blackburn, Florida Museum of Natural History | |David Blackburn, Florida Museum of Natural History | ||
|- | |- | ||
| Line 79: | Line 80: | ||
|- | |- | ||
|style="vertical-align:top;"|1:30-1:45 p.m. | |style="vertical-align:top;"|1:30-1:45 p.m. | ||
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Review and discussion of pre-workshop survey results | |rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:SurveySummary.pdf|Review and discussion of pre-workshop survey results]] | ||
(including discussion of the status of databasing in fish and herp collections) | (including discussion of the status of databasing in fish and herp collections) | ||
|Gil Nelson | |Gil Nelson | ||
| Line 85: | Line 86: | ||
|- | |- | ||
|style="vertical-align:top;"|1:45-3:00 p.m. | |style="vertical-align:top;"|1:45-3:00 p.m. | ||
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Status of imaging at participating collections: | |rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Status of imaging at participating collections:<br>[https://docs.google.com/document/d/16KZvAfY8ywCn2BE6C4RyGzXhFu7XM00_4BBzaGAg7Wg/edit?usp=sharing Document for notetaking]<br> | ||
Each participant to have 3 minutes to outline the status of imaging at their institution.<br>* Current imaging practices<br>* Issues to resolve<br>* Future plans<br>* Challenges<br>* 2D, 3D, CT, | Each participant to have 3 minutes to outline the status of imaging at their institution.<br>* Current imaging practices<br>* how are images being used<br>* Issues to resolve<br>* Future plans<br>* Challenges<br>* Institutional choices about what to image<br>* Preferences: 2D, 3D, CT, no imaging<br>* Institutional predispositions regarding the value and use of images | ||
|Greg Watkins-Colwell, Yale Peabody Museum, moderator | |Greg Watkins-Colwell, Yale Peabody Museum, moderator | ||
|- | |- | ||
| Line 95: | Line 96: | ||
|- | |- | ||
|style="vertical-align:top;"|3:30-4:30 p.m. | |style="vertical-align:top;"|3:30-4:30 p.m. | ||
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Imaging for data collection: An overview | |rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:A_researcher’s_perspective.pdf|Imaging for data collection: An overview]] | ||
|Miriam Zelditch, U. Michigan<br>Donald Swigerski, U. Michigan | |Miriam Zelditch, U. Michigan<br>Donald Swigerski, U. Michigan | ||
|- | |- | ||
| Line 109: | Line 110: | ||
|- | |- | ||
|- | |- | ||
|rowspan="1" colspan="3" style="text-align:center; background-color:#FFF8DC;"|Dinner on Your Own | |rowspan="1" colspan="3" style="text-align:center; background-color:#FFF8DC;"|Dinner on Your Own<br> | ||
Recommended gathering place: [http://www.houlihans.com/my-houlihans/champaign Houlihans]<br> Reservation at 6:15 pm, Meet in hotel lobby at 6:00 pm | |||
|- | |- | ||
|} | |} | ||
| Line 134: | Line 136: | ||
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"| | |rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"| | ||
Breakout discussions focused on uses and value of images: | Breakout discussions focused on uses and value of images: | ||
*Fish | *[https://docs.google.com/document/d/1rry-pVW2rX1nyazW1saURvhaJd--55WAdLrPSl3mBow/edit Fish] | ||
*Herps | *[https://docs.google.com/document/d/1jJD1xVRhYXOyzj_J6cNF8JsR9sB4d3iQJjo1vx9c2p4/edit Herps]<br> | ||
|Chris Phillips, Moderator | |Chris Phillips, Moderator | ||
|- | |- | ||
|- | |- | ||
|style="vertical-align:top;"|9:00-10:00 a.m. | |style="vertical-align:top;"|9:00-10:00 a.m. | ||
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Breakout discussions | |rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Breakout discussions: | ||
Important research questions to be answered by a large dataset of fish and herp images? | Important research questions to be answered by a large dataset of fish and herp images?<br> | ||
*[https://docs.google.com/document/d/15QISIVWc0wvQz4x-O9LJICBYW_TIZR1dajbTqj93i84/edit Research questions 1] | |||
*[https://docs.google.com/document/d/1PK1qO9w_j8EHgSOF7PJ80a7QOCvk0GCTLbC3DbiIs-E/edit?usp=sharing Research questions 2] | |||
*[https://docs.google.com/document/d/1UD54G4tHBdk9RtM8gTLhWV-lUbb_YoztTo6cHUQ5pME/edit Research questions 3] | |||
|Chris Phillips, Moderator | |Chris Phillips, Moderator | ||
|- | |- | ||
| Line 156: | Line 161: | ||
|style="vertical-align:top;"|11:30-12:00 a.m. | |style="vertical-align:top;"|11:30-12:00 a.m. | ||
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Organize for afternoon deliberations:<br>What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN: goals, outcomes, components, and research basis? | |rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Organize for afternoon deliberations:<br>What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN: goals, outcomes, components, and research basis? | ||
*Determine discussion group themes | *Determine discussion group themes<br> | ||
**[https://docs.google.com/document/d/1ENCG8CaMtjVcxbIV3TwfNd_bxBYj51PJHnWlVvzvgqo/edit Broader Impacts] | |||
**[https://docs.google.com/document/d/1zgahGenuw3VnpZCVWh7iAnQz97o8TKWD47M25xYy0qk/edit Imaging Focus] | |||
''-Ecological component: looking beyond fishes and herps <br> | |||
''-Digitization of field notes to support digitized images for holistic picture of organisms''<br> | |||
''-Imaging beyond the specimen: utilizing photographs from the field''<br> | |||
''-Broader impacts''<br> | |||
''-Quality of data: Developing standards(Future workshop?)''<br> | |||
*Select discussion group participation | *Select discussion group participation | ||
*Outline expected group discussion and afternoon outcomes | *Outline expected group discussion and afternoon outcomes | ||
*Grand challenge research questions | *Grand challenge research questions | ||
<br>[https://docs.google.com/document/d/1xhHyOqj-8rZSyQEha7La7lb9WAYvIpB_Vn-0D4yo1bo/edit?usp=sharing Discussion documentation] | |||
|Gil Nelson, moderator | |Gil Nelson, moderator | ||
|- | |- | ||
| Line 169: | Line 182: | ||
|style="vertical-align:top;"| | |style="vertical-align:top;"| | ||
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|<b>Afternoon theme: | |rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|<b>Afternoon theme: | ||
What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN?</b> | What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN?</b><br>[https://docs.google.com/document/d/1flC4rgSVuqut7USz4K6XyBCSNXIsGYhk82dkWZ5jXog/edit?usp=sharing Notes document] | ||
*[https://docs.google.com/document/d/158Mf3WqypJPiLHfQHi0N3XVDuTtWVq8owa0H_8Ld1FQ/edit Mechanics] | |||
|Larry Page, moderator | |Larry Page, moderator | ||
|- | |- | ||
Latest revision as of 09:56, 28 March 2016
Overcoming Challenges for Imaging Fluid-preserved Vertebrates
iDigBio Workshops
Logistics
- Event hashtag: #vertdigi
- Workshop Logistics Document
- Hotel information
- Mass Transit information
- Original workshop announcement
Agenda, Day 1
Tuesday, March 15, 2016
| Day One | ||
|---|---|---|
| Time | Topic | Presenter(s)/Leader(s) |
| 6:30 - 7:30 a.m. | Breakfast at Hotel Complimentary breakfast 6:30 - 9:30 a.m. | |
| 8:00-8:15 a.m. | Welcome, Logistics, and Introductions | Gil Nelson, iDigBio/Florida State University Chris Phillips, Illinois Natural History Survey |
| 8:15-8:45 a.m. | Larry Page, iDigBio/Florida Museum of Natural History | |
| 8:45-9:15 a.m. | Why this Workshop? Workshop Goals, Discussion, agenda additions |
Larry Page Gil Nelson |
| 9:15-9:45 a.m. | The case for imaging fish | Mark Sabaj-Perez, Drexel |
| 9:45-10:15 a.m. | The case for imaging herps | Hinrich Kaiser, Victor Valley College |
| 10:15-10:45 a.m. | Break | |
| 10:45-11:15 a.m. | The case for 2D imaging | Mark Sabaj-Perez |
| 11:15-12:00 p.m. | The case for 3D imaging Photogrammetry |
Hank Bart, Tulane Nelson Rios, Tulane |
| 12:00-12:30 p.m. | The case for CT imaging | David Blackburn, Florida Museum of Natural History |
| 12:30-1:30 p.m. | Lunch | |
| 1:30-1:45 p.m. | Review and discussion of pre-workshop survey results
(including discussion of the status of databasing in fish and herp collections) |
Gil Nelson |
| 1:45-3:00 p.m. | Status of imaging at participating collections: Document for notetaking Each participant to have 3 minutes to outline the status of imaging at their institution. |
Greg Watkins-Colwell, Yale Peabody Museum, moderator |
| 3:00-3:30 p.m. | Break | |
| 3:30-4:30 p.m. | Imaging for data collection: An overview | Miriam Zelditch, U. Michigan Donald Swigerski, U. Michigan |
| 4:30-4:45 p.m. | Discussion/Q&A: Imaging for data collection | Miriam & Donald moderators |
| 4:45-5:00 p.m. | Daily wrap-up, observations, comments, challenges, criticisms, further discussion | Greg Watkins-Colwell moderator |
| Dinner on Your Own Recommended gathering place: Houlihans | ||
Agenda, Day 2
Wednesday, March 16, 2016
| Day One | ||
|---|---|---|
| Time | Topic | Presenter(s)/Leader(s) |
| 6:30 - 7:30 a.m. | Breakfast at Hotel Complimentary breakfast 6:30 - 9:30 a.m. | |
| 8:00-8:15 a.m. | Lingering questions and observations from Day 1 | Larry Page, Moderator |
| 8:15-9:00 a.m. |
Breakout discussions focused on uses and value of images: |
Chris Phillips, Moderator |
| 9:00-10:00 a.m. | Breakout discussions:
Important research questions to be answered by a large dataset of fish and herp images? |
Chris Phillips, Moderator |
| 10:00-10:30 a.m. | Break | |
| 10:30-11:30 a.m. | Breakout session reports on potential research questions | Mark Sabaj-Perez, moderator |
| 11:30-12:00 a.m. | Organize for afternoon deliberations: What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN: goals, outcomes, components, and research basis?
-Ecological component: looking beyond fishes and herps
|
Gil Nelson, moderator |
| 12:00-1:00 p.m. | Lunch | |
| Afternoon theme:
What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN? |
Larry Page, moderator | |
| 1:00-3:00 p.m. | Discussion breakouts | |
| 3:00-3:30 p.m. | Break | |
| 3:30-5:00 p.m. | Discussion group reports and additional plenary discussion | |
| Dinner on Your Own | ||