NANSH Working Group: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
| (43 intermediate revisions by 2 users not shown) | |||
| Line 3: | Line 3: | ||
==[[Digitization Training Workshops|Digitization Training Workshops Wiki Home]]== | ==[[Digitization Training Workshops|Digitization Training Workshops Wiki Home]]== | ||
==Contact Information== | |||
*For further information about this working group or the Small Collections Network, contact: | |||
**Gil Nelson (gnelson@bio.fsu.edu) or | |||
**Anna Monfils (monfi1ak@cmich.edu) | |||
*To join the Small Collections Network listserv, visit: [http://scnet.acis.ufl.edu/tags/listserv SCNet.acis.ufl.edu] | |||
==Interest Group Working Documents== | ==Interest Group Working Documents== | ||
| Line 9: | Line 14: | ||
*[https://docs.google.com/document/d/1eZgDDlFpdT-erst2xLeg4dZzsuIsfRghcecnhl5Pfhg/edit?usp=sharing Issues in Recruiting, Retaining, and Sustaining Digitization in Small Herbaria] | *[https://docs.google.com/document/d/1eZgDDlFpdT-erst2xLeg4dZzsuIsfRghcecnhl5Pfhg/edit?usp=sharing Issues in Recruiting, Retaining, and Sustaining Digitization in Small Herbaria] | ||
==Potential Meeting Topics== | ==Upcoming Webinars and Meetings== | ||
*All meetings/webinars are held at https://idigbio.adobeconnect.com/smallherb | |||
*7 July 2014, 3:00 p.m. EDT Georeferencing herbarium specimens using Geolocate, Part I, with Nelson Rios | |||
**[http://idigbio.adobeconnect.com/p1wtfeto4kg/ Webinar Recording] | |||
*21 July 2014, 3:00 p.m. EDT Georeferencing herbarium specimens using Geolocate, Part II, with Nelson Rios | |||
**[http://idigbio.adobeconnect.com/p5jm7vlf5xr/ Webinar Recording] | |||
==Potential and Recommended Meeting Topics== | |||
*Using Geolocate for georeferencing herbarium collections (Nelson Rios): this could be a series of several webinars all focused on herbarium georeferencing. | *Using Geolocate for georeferencing herbarium collections (Nelson Rios): this could be a series of several webinars all focused on herbarium georeferencing. | ||
*Digital Photography 101: Morphology of a digital camera (Gil Nelson): this could also be series with more than one speaker. | *Digital Photography 101: Morphology of a digital camera (Gil Nelson): this could also be series with more than one speaker. | ||
| Line 22: | Line 34: | ||
*Sustaining Digitization: After the initial digitization | *Sustaining Digitization: After the initial digitization | ||
*Sharing Resources: Creating a Consortium of Small Collections | *Sharing Resources: Creating a Consortium of Small Collections | ||
==Meetings== | ==Meetings== | ||
| Line 32: | Line 43: | ||
==Species/Herbaria lists by states== | ==Species/Herbaria lists by states== | ||
*[[Media:Methods.pdf|Methods]] | |||
**[[Media:SpeciesDistributionModelingusingGBIFdata-HeatherDame.pdf|Modeling Species Distribution and Species Richness for Fuireneae (sedges) in North America (Heather Dame)]] | |||
*[http://idigbio.org//sites/default/files/working-groups/NANSH/Species_List_Information.xlsx Composite Species Lists] | |||
*Arkansas | *Arkansas | ||
**[[Media:Marsico_Arkansas_S1_and_S2_List_19MAR2014.pdf|Arkansas S1 ands S2]] | |||
**[[Media:My_methodology.pdf|Travis Marsico's methodology]] | **[[Media:My_methodology.pdf|Travis Marsico's methodology]] | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/Arkansas_Tracked_Vascular_Plant_Species_S1_and_S2.xlsx Arkansas tracked vascular plants] | |||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/Arkansas_G1-G3.xlsx Arkansas species list (G1-G3)] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/Arkansas_G1-G3.xlsx Arkansas species list (G1-G3)] | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/ArkansasListNotes.pdf Arkansas List Notes] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/ArkansasListNotes.pdf Arkansas List Notes] | ||
*California | *California | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/ | **[http://idigbio.org/sites/default/files/working-groups/NANSH/California_RareCommonInvasive.xlsx California composite species lists (rare, common, invasive)] | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/California_Herbaria.xlsx California herbaria] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/California_Herbaria.xlsx California herbaria] | ||
**[[Media:NANSH_paper_Test_CA_species_Krimmel.pdf|Test species map for CA]] | **[[Media:NANSH_paper_Test_CA_species_Krimmel.pdf|Test species map for CA]] | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/NANSH_CA_S1.xlsx S1] | |||
*Colorado | *Colorado | ||
**[[Media:Colorado_Invasive_Species.pdf|Colorado invasive species]] | |||
**[[Media:Colorado_comon_species_with_methods.pdf|Colorado common species]] | |||
**[[Media:10_Random_S1_and_S2_species_for_Colorado.pdf|Colorado S1 and S2]] | |||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/CO_G1-G3_Plant%20List.xls Colorado species list] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/CO_G1-G3_Plant%20List.xls Colorado species list] | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/Colorado%20Herbaria.doc Colorado herbaria] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/Colorado%20Herbaria.doc Colorado herbaria] | ||
| Line 47: | Line 67: | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/FloridaG1.xlsx Florida G1 Species] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/FloridaG1.xlsx Florida G1 Species] | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/FloridaG2.xlsx Florida G2 Species] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/FloridaG2.xlsx Florida G2 Species] | ||
**[[Media:FloridaG1.pdf|Florida top ten G1]] | |||
**[[Media:FloridaG2.pdf|Florida top ten G2]] | |||
**[[Media:S1_Florida.pdf|Florida top ten S1]] | |||
**[[Media:S2_Florida.pdf|Florida top ten S2]] | |||
**[[Media:FL_Cat_I.pdf|Florida top ten Cat I invasive]] | |||
**[[Media:FL_Native_10.pdf|Ten Florida Natives]] | |||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/FloridaHerbaria.pdf Florida herbaria] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/FloridaHerbaria.pdf Florida herbaria] | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/FL_S1.xlsx S1] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/FL_S1.xlsx S1] | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/FL_Cat_I.xlsx Cat I Invasive] | |||
*Georgia | *Georgia | ||
**[ | **[[Media:Georgia_SI_taxa.pdf|Georgia Rare Plants S1]] | ||
**[ | **[[Media:Georgia S2 taxa.pdf|Georgia Rare Plants S2]] | ||
**[[Media:Georgia_common_taxa.pdf|Georgia common]] | |||
**[[Media:Georgia_invasive_plants.pdf|Georgia invasive]] | |||
**[[Media:Georgia_Herbaria.pdf|Georgia Herbaria]] | |||
*Michigan | *Michigan | ||
**[[Media:Michigan_Randomly_Generated_Lists.pdf |Michigan S1 and S2]] | |||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/Michigan_Herbarium_List.xlsx Michigan herbaria] | |||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/MIchiganListedSpecies.xlsx Michigan Listed Species] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/MIchiganListedSpecies.xlsx Michigan Listed Species] | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/Michigan_Native_Species.xlsx Michigan Native Species list] | |||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/MichiganNotes.pdf Michigan Notes] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/MichiganNotes.pdf Michigan Notes] | ||
*Tennessee | *Tennessee | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/TN_S1_RANDOM_0.xlsx Tennessee S1 and S2] | |||
**[[Media:G1-G3_species_for_Tennessee.pdf|Tennessee G1-G3 species]] | **[[Media:G1-G3_species_for_Tennessee.pdf|Tennessee G1-G3 species]] | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/TennesseeHerbaria.pdf Tennessee Herbaria] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/TennesseeHerbaria.pdf Tennessee Herbaria] | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/TN_S1_RANDOM.xlsx S1] | |||
*West Virginia | *West Virginia | ||
**[http://idigbio.org/sites/default/files/working-groups/NANSH/WV-T%26E%20plants.pdf West Virginia T&E Species] | **[http://idigbio.org/sites/default/files/working-groups/NANSH/WV-T%26E%20plants.pdf West Virginia T&E Species] | ||
| Line 75: | Line 110: | ||
*[https://docs.google.com/document/d/11NbXWsO2GFHBtFeaBKl4Ugi58NDZ1OErxdrRVL1l7Hc/edit Draft Agenda] | *[https://docs.google.com/document/d/11NbXWsO2GFHBtFeaBKl4Ugi58NDZ1OErxdrRVL1l7Hc/edit Draft Agenda] | ||
*Planning team | *Planning team | ||
**Ed Gilbert (Arizona State) | **Libby Ellwood (Florida State University/iDigBio) | ||
**Ed Gilbert (Arizona State University) | |||
**Emily Gillespie (Marshall) | **Emily Gillespie (Marshall) | ||
** | **Kari Harris (Arkansas State University) | ||
**Erica Krimmel (Sagehen Field Station) | |||
**Travis Marsico (Arkansas State University) | **Travis Marsico (Arkansas State University) | ||
**Anna Monfils (Central Michigan University) | **Anna Monfils (Central Michigan University) | ||
**Ashley Morris (Middle Tennessee State University) | **Ashley Morris (Middle Tennessee State University) | ||
**Gil Nelson ( | **Gil Nelson (Florida State University/iDigBio) | ||
** | **Pam Soltis (University of Florida/iDigBio) | ||
** | **Kim Watson (New York Botanical Garden) | ||
==APG Documents and Web Sites== | ==APG Documents and Web Sites== | ||
Latest revision as of 13:05, 25 April 2015
This wiki supports the work of the NANSH (North American Network of Small Herbaria) Working Group, a group founded at the 2013 conference of the Association of Southeastern Biologists, Charleston, WV.
Digitization Training Workshops Wiki Home
Contact Information
- For further information about this working group or the Small Collections Network, contact:
- Gil Nelson (gnelson@bio.fsu.edu) or
- Anna Monfils (monfi1ak@cmich.edu)
- To join the Small Collections Network listserv, visit: SCNet.acis.ufl.edu
Interest Group Working Documents
- Proposal to establish interest group
- Discussion notes on potential small herbarium RCN
- Issues in Recruiting, Retaining, and Sustaining Digitization in Small Herbaria
Upcoming Webinars and Meetings
- All meetings/webinars are held at https://idigbio.adobeconnect.com/smallherb
- 7 July 2014, 3:00 p.m. EDT Georeferencing herbarium specimens using Geolocate, Part I, with Nelson Rios
- 21 July 2014, 3:00 p.m. EDT Georeferencing herbarium specimens using Geolocate, Part II, with Nelson Rios
Potential and Recommended Meeting Topics
- Using Geolocate for georeferencing herbarium collections (Nelson Rios): this could be a series of several webinars all focused on herbarium georeferencing.
- Digital Photography 101: Morphology of a digital camera (Gil Nelson): this could also be series with more than one speaker.
- Digital image file types and standards, what file formats mean and recommended practices: JPG, TIFF, NEF, CR2, DNG
- Demonstration of Semi-automatic Label Information Extraction System (SALIX) (Daryl Lafferty): see for reference, http://nhc.asu.edu/vpherbarium/canotia/SALIX3.pdf
- Uploading data through the Specify Workbench (Andy Bentley): this could also be a 3 or 4-part series
- The future of NSF funding for small herbaria (NSF staff): where small herbaria fit into the picture
- Digitization 101: Basics I need to know to start, initial steps for getting started (suggested from Small Herbarium Workshop at FSU)
- What are Darwin Core and IPT?
- OCR, Machine Learning, Natural Language Processing
- What does digitization do for me?
- Sustaining Digitization: After the initial digitization
- Sharing Resources: Creating a Consortium of Small Collections
Meetings
- 14 Feb 2014, 2-3 p.m. Stinger Guala, BISON, GBIF, ITIS
Discussion Notes
Species/Herbaria lists by states
- Methods
- Composite Species Lists
- Arkansas
- California
- Colorado
- Florida
- Georgia
- Michigan
- Tennessee
- West Virginia
Research Tasks
- Criteria for species selection (G species, co-efficient of conservation, endemics, invasive, weedy, etc.)
- Strategies for selecting herbaria from each state
- Strategies for sampling data from not-yet-digitized herbaria
- Compiling/writing a literature review
- Compiling data from specimens cited in floras and publications (Travis)
- Determining the use of BISON data/tools
North American Network of Small Herbaria
Botany 2014 Small Herbarium Workshop
- Draft Agenda
- Planning team
- Libby Ellwood (Florida State University/iDigBio)
- Ed Gilbert (Arizona State University)
- Emily Gillespie (Marshall)
- Kari Harris (Arkansas State University)
- Erica Krimmel (Sagehen Field Station)
- Travis Marsico (Arkansas State University)
- Anna Monfils (Central Michigan University)
- Ashley Morris (Middle Tennessee State University)
- Gil Nelson (Florida State University/iDigBio)
- Pam Soltis (University of Florida/iDigBio)
- Kim Watson (New York Botanical Garden)
APG Documents and Web Sites
- Notes (2013-10-11)
- Angiosperm Phylogeny Group 2009: latest paper (APGIII)
- Stevens: Angiosperm Phylogeny website
- Chase and Reveal 2009: phylogenetic classification of land plants for APGIII
- Smith et al. 2006: recent treatment of ferns
- Rothfels Sundue et al 2012: revised family level classification of Polypodiales
- Index Fungorum web site