Cyberinfrastructure Working Group: Difference between revisions
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*Ex Officio: [http://www.idigbio.org/contact/Dr.%20Jose%20Fortes José Fortes], iDigBio Director for Computational Activities | *Ex Officio: [http://www.idigbio.org/contact/Dr.%20Jose%20Fortes José Fortes], iDigBio Director for Computational Activities | ||
==CYWG Meetings== | |||
Presentations from iDigBio IT: | Presentations from iDigBio IT: | ||
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*Tue, February 19th, 2013 - 1:00pm EST ([[CYWG iDigBio Image Ingestion Appliance|iDigBio Image Ingestion Appliance]] - [[Media:CYWG-ImageApplianceFeb19-2.pdf | presentation slides]]) | *Tue, February 19th, 2013 - 1:00pm EST ([[CYWG iDigBio Image Ingestion Appliance|iDigBio Image Ingestion Appliance]] - [[Media:CYWG-ImageApplianceFeb19-2.pdf | presentation slides]]) | ||
*Mon, September 9th, 2013 - 10:00am EDT ([[CYWG iDigBio v3 Preview]] -[[Media:IDigBiov3Preview.pdf | presentation slides]]) - release of v3 APIs as described in this document has been delayed. | *Mon, September 9th, 2013 - 10:00am EDT ([[CYWG iDigBio v3 Preview]] -[[Media:IDigBiov3Preview.pdf | presentation slides]]) - release of v3 APIs as described in this document has been delayed. | ||
*Friday, October 10, 2014 - 11:00am EDT | *Friday, October 10, 2014 - 11:00am EDT: | ||
** [[Media:IDigBio_Search_Portal_CYWG_2014_gtv2.pdf|iDigBio Portal]] (queries and GUI features), by Greg Traub | |||
** iDigBio data ingestion (formats, process, etc.), by Dan Stoner | |||
** [[Media:IDigBio_Architecture_CYWG_2014_atv4.pdf|iDigBio architecture and API]], by Alex Thompson | |||
** [[Media:IDigBio_Research_CYWG_2014_amv2.pdf|Uses of the iDigBio APIs by research tools]], by Matt Collins and Andréa Matsunaga | |||
** [[Media:IDigBio_Appliance_CYWG_2014_rfv3.pdf|iDigBio appliances update]], by Renato Figueiredo | |||
Meetings with individual TCNs: | Meetings with individual TCNs: | ||
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*Tue, July 3rd, 2013 - 10:00am EST ([[Plants, Herbivores, and Parasitoids: A Model System for the Study of Tri-trophic Associations|TTD-AMNH]] Image ingestion) | *Tue, July 3rd, 2013 - 10:00am EST ([[Plants, Herbivores, and Parasitoids: A Model System for the Study of Tri-trophic Associations|TTD-AMNH]] Image ingestion) | ||
==Documentation== | |||
Related documentation from iDigBio: | Related documentation from iDigBio: | ||
*[[Data Ingestion Guidance]] | *[[Data Ingestion Guidance]] | ||
Revision as of 14:46, 9 October 2014
The Cyberinfrastructure Working Group (CYWG) was established as an outcome of the iDigBio IT Standards Workshop held in Gainesville, FL on March 28-30, 2012. In line with the iDigBio roadmap, the focus of the initial group will be on the iDigBio data ingestion procedures related to API (Application Programming Interface) or appliance specification, implementation and test.
The working group will produce material with concrete data ingestion use cases from TCNs, provide input about the existing cyberinfrastructure, produce data ingestion requirements, and help evaluate iDigBio services and appliances implementations.
To express an interest in joining the working group, please contact Andréa Matsunaga.
Current members:
- Andréa Matsunaga (Co-Lead), iDigBio IT
- Joanna McCaffrey (Co-Lead), iDigBio Biodiversity Informatics Manager
- Renato Figueiredo, iDigBio IT
- Alex Thompson, iDigBio IT
- Greg Traub, iDigBio IT
- Dan Stoner, iDigBio IT
- Kevin Love, iDigBio IT
- Yonggang Liu, iDigBio IT
- Kyuho Jeong, iDigBio IT
- Casey McLaughlin, iDigBio IT
- Robert Anglin Great Lakes Invasives TCNs IT
- James Beach, Paleoniches TCN IT/Co-PI, University of Kansas
- Andrew Brown KE Software
- Herrick Brown SERNEC TCN
- Nico Franz Great Lakes Invasives TCNs IT
- Larry Gall Yale Peabody
- Edward Gilbert, Lichens & Bryophytes, SCAN and Great Lakes Invasives TCNs IT, Symbiota
- Corinna Gries, Lichens & Bryophytes, PI
- Paul L Heinrich, SCAN TCN
- Joe Leigh, InvertNet TCN IT Data
- Derek Masaki, BISON
- Ben Norton, North Carolina Museum of Natural Sciences
- Katja Seltmann, Tri-trophic TCN IT, AMNH
- Petra Sierwald InvertEBase
- Nahil Sobh, InvertNet TCN IT, Co-PI
- Omar Sobh, InvertNet TCN IT
- Melissa Tulig Tri-trophic TCN NYBG
- Kim Watson Tri-trophic TCN NYBG
- Ex Officio: José Fortes, iDigBio Director for Computational Activities
CYWG Meetings
Presentations from iDigBio IT:
- Wed, January 23rd, 2013 - 1:00pm EST (iDigBio DwC-A Pull Ingestion)
- Tue, February 19th, 2013 - 1:00pm EST (iDigBio Image Ingestion Appliance - presentation slides)
- Mon, September 9th, 2013 - 10:00am EDT (CYWG iDigBio v3 Preview - presentation slides) - release of v3 APIs as described in this document has been delayed.
- Friday, October 10, 2014 - 11:00am EDT:
- iDigBio Portal (queries and GUI features), by Greg Traub
- iDigBio data ingestion (formats, process, etc.), by Dan Stoner
- iDigBio architecture and API, by Alex Thompson
- Uses of the iDigBio APIs by research tools, by Matt Collins and Andréa Matsunaga
- iDigBio appliances update, by Renato Figueiredo
Meetings with individual TCNs:
- Wed, September 04, 2013 3:00 PM-3:30 PM (NEVP)
- Wed, September 04, 2013 2:00 PM-2:30 PM (Paleoniches)
- Tue, August 20, 2013 1:00 PM-1:30 PM (SCAN)
- Mon, May 13, 2013 - 2:00pm EST (InvertNet)
- Tue, June 26th, 2013 - 10:00am EST (TTD-AMNH Data ingestion)
- Tue, July 3rd, 2013 - 10:00am EST (TTD-AMNH Image ingestion)
Documentation
Related documentation from iDigBio:
- Data Ingestion Guidance
- GUID Guide (June 26, 2013)
- Data Ingestion Requirements and Guidelines (May 2013)
- Image Format Requirements and Recommendations (September 21, 2012)
- iDigBio Virtual Appliances (November 2013)
- iDigBio APIs (November, 2013)
- Intellectual Property Policy (April 17, 2012)
- View the overall count and distribution of datasets ingested into the portal
- iDigBio Nuts and Bolts - Data Integration and Ingestion
Miscellaneous documentation:
- Example of trivial transformations on INHS fish dataset
- Example of transformations on InvertNet image metadata dataset
Join us via AdobeConnect: http://idigbio.adobeconnect.com/it
Cyberinfrastructure Working Group listserv idigbio-cywg-l@lists.ufl.edu
Ex Officio: José Fortes, iDigBio Director for Computational Activities
Please feel welcome to explore other working groups.